==>runtrx start: date:  Mon Apr 23 06:05:10 EDT 2018 ( mccune001.pppl.gov )
argv = 2
iarg = 2
cmd_opt  = pre
runtrx: tok.yy = JET.16
==========(runtrx)======================
date:  Mon Apr 23 06:05:10 EDT 2018 ( mccune001.pppl.gov )
args:  92316X02 pre
==========(runtrx)======================
==========(runtrx)======================
==========TRANSP preprocessing==========
date:  Mon Apr 23 06:05:10 EDT 2018 ( mccune001.pppl.gov )
==========check for 92316X02_mdsmark.sh===
==========(runtrx)======================
==========TRDAT execution===============
date:  Mon Apr 23 06:05:10 EDT 2018 ( mccune001.pppl.gov )
    TRDAT Default  vn 2.02 10-3-2010 
 %TRDAT:  detected ELVIS_SERVER = "/p/transpgrid/qshare/ElVis/".
  %trmpi_init.f90: LOG_LEVEL env. var.: 1
  %trmpi_init.f90: logfile_level: warn
  (mpi_share_env) process myid=           0  cwd: 
 /local/tr_jbuchana/transp_compute/JET/92316X02
  CTOKNM : Cdir = /local/tr_jbuchana/transp_compute/JET/92316X02/
 % DIRECTORY IS /local/tr_jbuchana/transp_compute/JET/92316X02/; TOKAMAK ID SET TO JET 
 %trmpi_openlog: LOGFILE_LEVEL = warn
 trcore/pre_tok -I- JET  specific defaults set 
  
 namelist elements assigned more than once WITH change of value:
   NNPHI                                NUM_NPHI                               
   WNPHI                                                                       
  
 namelist element value field(s): decimal point(s) inserted:
   AIMP                                 FNEMIN                                 
   XZIMP                                DN0OUT                                 
   DTMINT                               DTMING                                 
   XZRCYC                                                                      
     %NLIST: open namelist file92316X02TR.ZDA              
 %trcom_static_box: loading static data
  -----------> entering UF0GET.
 NAMED FILE:  ./92316X02_tmp/OMF92316.NB2
 %UF0DRD:  DIMENSIONALITY OF INPUT FILE = 2
 % NO. OF BEAMS (NB2 DATA) = 15
 NAMED FILE:  ./92316X02_tmp/OMF92316.MMX
 %UF0DRD:  DIMENSIONALITY OF INPUT FILE = 3
  UF0GET: -> Btor is clockwise from BTOR_CCW scalar in MMX data.
  UF0GET: -> Itor is clockwise from ITOR_CCW scalar in MMX data.
  UF0GET: MMX max exponent:            2
  %UF0GET -- finished.
  
 %datchk:  NLFBM set to .TRUE., no option.
  Note: nlfsp_server FALSE => nlfsp_species FALSE.
  Note: nlfsp_server FALSE => nlfsp_psirz FALSE.
 DATCHK: CHECKING ARRAY DIMENSIONS, SWITCHES, ETC
  %DATCHK -- UP-DOWN ASYMMETRY DETECTED
  %DATCHK: NYXINV incremented to be odd:         101         161
  %DATCHK: no ECH/ECCD, NLECRF=F, nantech=0 set.
  %DATCKICH: TORIC-5 solver, with numerical  MHD equilibrium geometry.
  %DATCKICH: RGEOANT_A is in use => ignore NGEOANT=1
   NGEOANT reset to match number of non-zero RGEOANT values.
  *** NGEOANT reset to:           10
  Warning! Result depends on setting RGEOANT_A!
  %DATCKA: ACfile times pre-screen... 
  %DATCKA: ACfile times pre-screen... 
 %DATCKA -- CHECKING NON-DEFAULT SPECIFICATIONS FOR AC FILE I/O
  GIVEN IN NAMELIST CHARACTER DATA ARRAYS "SELOUT" AND "SELAVG"
 %ASCXFIN -- AC FILE OPERATION COMPLETED SUCCESSFULLY.
  dummy trdatusub vsn trgdat_check called (OK).
  dummy trdatusub vsn trgdat_psload called (OK).
  *UTRCHK:  CHECKING TRDAT NAMELIST SPECIFICATIONS.

 *** OFFSET (TIME0) OF  4.0000E+01 SECONDS APPLIED TO ALL INPUT DATA ***


 *DDEFIN:  SET UP PHYSICS DATA FOR ANALYSIS:
  TIME RANGE IS TINIT= 8.0000E+00, FTIME= 8.0500E+00 SECONDS.

 SETSCD - SET SCALAR DATA FOR UPF
 SETTIM - SET UP TIMING INFORMATION FOR UPF

 *UF1GET:  PROCESSING "CUR":  plasma current amps    -------------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.CUR

 *UF1GET:  PROCESSING "RBZ":  [ext. B field] * R Tesla*cm    -----------
 NAMED FILE:  ./92316X02_tmp/OMF92316.RBZ
 %FIXUNS:  CONVERTING UFILE RBZ DATA UNITS, M.T       , TO Tesla*cm  
          >CONVERSION FACTOR:  * 100.000    

 *UF1GET:  PROCESSING "DFL":  diamagnetic flux Webers    ---------------
 NAMED FILE:  ./92316X02_tmp/MAGN92316.FLX

 *UF1GET:  PROCESSING "GAS":  gas flow source #/sec    -----------------
 NAMED FILE:  ./92316X02_tmp/GASM92316.ELER

 *UF1GET:  PROCESSING "NTX":  Neutron flux n/sec    --------------------
 NAMED FILE:  ./92316X02_tmp/TIN92316.RNT

 *UF1GET:  PROCESSING "RCY":  recycling source #/sec    ----------------
 NAMED FILE:  ./92316X02_tmp/EDG792316.FLW
 %FIXUNS:  Rescaling Ufile RCY DATA by  10.0000     ( SC_RCY     )

 *UF1GET:  PROCESSING "VSF":  surface voltage volts    -----------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.VSF

 *UF1GET:  PROCESSING "ZEF":  Zeff      ------------------------------- 
 NAMED FILE:  ./92316X02_tmp/KS392316.ZEFV

 *UF3GET:  PROCESSING "MMX":  Equilibrium moments cm    ----------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.MMX
 %FIXUNS:  CONVERTING UFILE DATA UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    
  ---> Geteq: #moments NMOM =           16
 Geteq: Interpolate equilibrium data for UPF
 SETLIM - SET UP Axisymmetric limiter data for UPF

 *UF1GET:  PROCESSING "LIM":  Axisymmetric Limiter cm    ---------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.LIM
 %UF1GET:  X axis is not the timebase, processing axis units cm
 %FIXUNS:  CONVERTING UFILE LIM TIMEBASE UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    
 %FIXUNS:  CONVERTING UFILE LIM DATA UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    

 *UF2GET:  PROCESSING "BOL":  Power radiated W/cm**3    ----------------
 NAMED FILE:  ./92316X02_tmp/BOLO92316.TOBU
 _%UF2GET FALLBACK:  1D UFILE INPUT => TIME SERIES F(T) DATA
           %units check required: fallback to time series.

 *UF2GET:  PROCESSING "NER":  electron density n/cm**3    --------------
 NAMED FILE:  ./92316X02_tmp/LIDR92316.NE
 %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
  1ST DIMENSION = "m         "; 2ND DIMENSION = "SEC       "
 %FIXUNS:  CONVERTING UFILE NER X-AXIS UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    
 %FIXUNS:  CONVERTING UFILE NER DATA UNITS, M**-3     , TO n/cm**3   
          >CONVERSION FACTOR:  *0.100000E-05
 %SETRD0:  X VECTOR SET FROM UFILE *OUTSIDE* MAJOR RADIUS DATA

 *UF2GET:  PROCESSING "QPR":  q profile      ---------------------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.QPR
 %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
  1ST DIMENSION = "          "; 2ND DIMENSION = "Seconds   "
 %SETDAT2-- X axis is normalized flux, not modified, npts= 41

 *UF2GET:  PROCESSING "TER":  electron temperature eV    ---------------
 NAMED FILE:  ./92316X02_tmp/LIDR92316.TE
 %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
  1ST DIMENSION = "m         "; 2ND DIMENSION = "SEC       "
 %FIXUNS:  CONVERTING UFILE TER X-AXIS UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    
 %SETRD0:  X VECTOR SET FROM UFILE *OUTSIDE* MAJOR RADIUS DATA

 *UF2GET:  PROCESSING "TI2":  ion temperature eV    --------------------
 NAMED FILE:  ./92316X02_tmp/CXGM92316.TI
 %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP:
  1ST DIMENSION = "m         "; 2ND DIMENSION = "SEC       "
 %FIXUNS:  CONVERTING UFILE TI2 X-AXIS UNITS, M         , TO cm        
          >CONVERSION FACTOR:  * 100.000    
 %CKSETRD:  NRITI2=1 DATA:  PLASMA COVERAGE CHECK:
  GREATEST LOWER BOUND (*) (R-R0)/A =  6.7186E-01
  LEAST UPPER BOUND (*)    (R-R0)/A =  9.4524E-01
 *EXPECTED MINIMUM COVERAGE TO INCLUDE RANGE (R-R0)/A = 
   1.0000E-01 TO  9.0000E-01 AT ALL TIMES IN THE ANALYSIS.
 *REQUIREMENT RELAXED BY NAMELIST:  XRCTI2=-1.000E+00 RMJCHK= 1.000E+00
 %SETRD0:  X VECTOR SET FROM UFILE *OUTSIDE* MAJOR RADIUS DATA

 *DDEFIN: Set Plasma Heating parameters :-    ==========================
  
  -> entering setnbi (neutral beam powers, voltages, etc.)
 SETNBI - SET UP NEUTRAL BEAM DATA FOR UPF

 *UF2GET:  PROCESSING "NB2":  beam heating data      -------------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.NB2
 %SETNBI- BEAM FULL ENERGY FRACTIONS SET BY NBI FILE **
 %SETNBI- BEAM HALF ENERGY FRACTIONS SET BY NBI FILE **
  %setnbi: NBI on/off times taken from data.
 %NB_ONOFF: NBI on/off times (s):   5.7566E+00  1.3516E+01
  
  -> entering setrfp (ICRF powers)
 SETRFP - SET UP ICRF POWER DATA FOR UPF

 *UF2GET:  PROCESSING "RFP":  RF heating data      ---------------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.RFP
  %ICRF on/off times taken from data.
  %ICRF_ONOFF: no ICRF on/off times found.
  
 SETRFP - SET UP ICRF FREQUENCY DATA FOR UPF

 *UF2GET:  PROCESSING "RFF":  RF frequency data Hz    ------------------
 NAMED FILE:  ./92316X02_tmp/OMF92316.RFF
  
  -> entering setlhp (Lower Hybrid powers)
  (no Lower Hybrid Antenna Powers detected)
  
  -> entering setecp (ECH/ECCD powers)
  (no ECH/ECCD detected)
  
  Zeff vs. time only:
    Zeff vs. time input data provided.
 %SETDFLT:  "DTG" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DTMAXG =  2.0000E-02
  %setmisc -- time dependent geometry timestep enabled (ZOOM is off).
 %SETDFLT:  "DTS" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DT_SOURCES =  2.5000E-01
  %setmisc -- time dependent source timestep enabled (ZOOM is off).
 %SETDFLT:  "DTX" INPUT DATA FILE NOT SPECIFIED
 ==>DEFAULT VALUE SUBSTITUTED, DT_OUTPUT =  2.5000E-01
  %setmisc -- time dependent output timestep enabled (ZOOM is off).
  --------------------------------------------------
  %trdat_bdy_check -- checking plasma boundary data
                      and checking plasma boundary is inside vacuum vessel
  
  trdat_bdy_check: OK
  ...min(r_curvature/(Rmax-Rmin)) is:   0.129651604887792     
  ...at time t=   8.05000000000000       seconds.
  

 ------------> thermal ion ptcl balance summary:

  Hydrogen  (absent)                                         
  Deuterium NDEFINE=0 NMODEL=4 RC=NLRCYC GF=NLRCYC           
  Tritium   (absent)                                         
  Helium-3  (absent)                                         
  Helium-4  (absent)                                         
  Lithium-6 (absent)                                         

 Recycling fractions RFRAC are specified.

 ------------------------------------
  Fast ion summary:
  
  Beam species: D
  Fusion product species: (None)
  Minority RF species: (None)
 ------------------------------------
File /p/transpgrid/qshare/ElVis/ already exists, renamed to /p/transpgrid/qshare/ElVis/~
==========(runtrx TRDAT sts = 0)======
==========LABEL execution===============
date:  Mon Apr 23 06:05:11 EDT 2018 ( mccune001.pppl.gov )
==>runtrx:  label execution successful
==>runtrx: LINK_ON_HOST environment variable detected.
==========(runtrx)======================
==========>runtrx normal exit<==========
date:  Mon Apr 23 06:05:11 EDT 2018 ( mccune001.pppl.gov )