#define PETSCMAT_DLL /* Defines the basic matrix operations for the MAIJ matrix storage format. This format is used for restriction and interpolation operations for multicomponent problems. It interpolates each component the same way independently. We provide: MatMult() MatMultTranspose() MatMultTransposeAdd() MatMultAdd() and MatCreateMAIJ(Mat,dof,Mat*) This single directory handles both the sequential and parallel codes */ #include "src/mat/impls/maij/maij.h" #include "src/mat/utils/freespace.h" #include "private/vecimpl.h" #undef __FUNCT__ #define __FUNCT__ "MatMAIJGetAIJ" PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJGetAIJ(Mat A,Mat *B) { PetscErrorCode ierr; PetscTruth ismpimaij,isseqmaij; PetscFunctionBegin; ierr = PetscTypeCompare((PetscObject)A,MATMPIMAIJ,&ismpimaij);CHKERRQ(ierr); ierr = PetscTypeCompare((PetscObject)A,MATSEQMAIJ,&isseqmaij);CHKERRQ(ierr); if (ismpimaij) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; *B = b->A; } else if (isseqmaij) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; *B = b->AIJ; } else { *B = A; } PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMAIJRedimension" PetscErrorCode PETSCMAT_DLLEXPORT MatMAIJRedimension(Mat A,PetscInt dof,Mat *B) { PetscErrorCode ierr; Mat Aij; PetscFunctionBegin; ierr = MatMAIJGetAIJ(A,&Aij);CHKERRQ(ierr); ierr = MatCreateMAIJ(Aij,dof,B);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatDestroy_SeqMAIJ" PetscErrorCode MatDestroy_SeqMAIJ(Mat A) { PetscErrorCode ierr; Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; PetscFunctionBegin; if (b->AIJ) { ierr = MatDestroy(b->AIJ);CHKERRQ(ierr); } ierr = PetscFree(b);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatView_SeqMAIJ" PetscErrorCode MatView_SeqMAIJ(Mat A,PetscViewer viewer) { PetscErrorCode ierr; Mat B; PetscFunctionBegin; ierr = MatConvert(A,MATSEQAIJ,MAT_INITIAL_MATRIX,&B); ierr = MatView(B,viewer);CHKERRQ(ierr); ierr = MatDestroy(B);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatView_MPIMAIJ" PetscErrorCode MatView_MPIMAIJ(Mat A,PetscViewer viewer) { PetscErrorCode ierr; Mat B; PetscFunctionBegin; ierr = MatConvert(A,MATMPIAIJ,MAT_INITIAL_MATRIX,&B); ierr = MatView(B,viewer);CHKERRQ(ierr); ierr = MatDestroy(B);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatDestroy_MPIMAIJ" PetscErrorCode MatDestroy_MPIMAIJ(Mat A) { PetscErrorCode ierr; Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscFunctionBegin; if (b->AIJ) { ierr = MatDestroy(b->AIJ);CHKERRQ(ierr); } if (b->OAIJ) { ierr = MatDestroy(b->OAIJ);CHKERRQ(ierr); } if (b->A) { ierr = MatDestroy(b->A);CHKERRQ(ierr); } if (b->ctx) { ierr = VecScatterDestroy(b->ctx);CHKERRQ(ierr); } if (b->w) { ierr = VecDestroy(b->w);CHKERRQ(ierr); } ierr = PetscFree(b);CHKERRQ(ierr); ierr = PetscObjectChangeTypeName((PetscObject)A,0);CHKERRQ(ierr); PetscFunctionReturn(0); } /*MC MATMAIJ - MATMAIJ = "maij" - A matrix type to be used for restriction and interpolation operations for multicomponent problems, interpolating or restricting each component the same way independently. The matrix type is based on MATSEQAIJ for sequential matrices, and MATMPIAIJ for distributed matrices. Operations provided: . MatMult . MatMultTranspose . MatMultAdd . MatMultTransposeAdd Level: advanced .seealso: MatCreateSeqDense M*/ EXTERN_C_BEGIN #undef __FUNCT__ #define __FUNCT__ "MatCreate_MAIJ" PetscErrorCode PETSCMAT_DLLEXPORT MatCreate_MAIJ(Mat A) { PetscErrorCode ierr; Mat_MPIMAIJ *b; PetscMPIInt size; PetscFunctionBegin; ierr = PetscNew(Mat_MPIMAIJ,&b);CHKERRQ(ierr); A->data = (void*)b; ierr = PetscMemzero(A->ops,sizeof(struct _MatOps));CHKERRQ(ierr); A->factor = 0; A->mapping = 0; b->AIJ = 0; b->dof = 0; b->OAIJ = 0; b->ctx = 0; b->w = 0; ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); if (size == 1){ ierr = PetscObjectChangeTypeName((PetscObject)A,MATSEQMAIJ);CHKERRQ(ierr); } else { ierr = PetscObjectChangeTypeName((PetscObject)A,MATMPIMAIJ);CHKERRQ(ierr); } PetscFunctionReturn(0); } EXTERN_C_END /* --------------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_2" PetscErrorCode MatMult_SeqMAIJ_2(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 2*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_2" PetscErrorCode MatMultTranspose_SeqMAIJ_2(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[2*i]; alpha2 = x[2*i+1]; while (n-->0) {y[2*(*idx)] += alpha1*(*v); y[2*(*idx)+1] += alpha2*(*v); idx++; v++;} } ierr = PetscLogFlops(4*a->nz - 2*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_2" PetscErrorCode MatMultAdd_SeqMAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 2*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_2" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_2(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[2*i]; alpha2 = x[2*i+1]; while (n-->0) {y[2*(*idx)] += alpha1*(*v); y[2*(*idx)+1] += alpha2*(*v); idx++; v++;} } ierr = PetscLogFlops(4*a->nz - 2*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* --------------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_3" PetscErrorCode MatMult_SeqMAIJ_3(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 3*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_3" PetscErrorCode MatMultTranspose_SeqMAIJ_3(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i]; v = a->a + a->i[i]; n = a->i[i+1] - a->i[i]; alpha1 = x[3*i]; alpha2 = x[3*i+1]; alpha3 = x[3*i+2]; while (n-->0) { y[3*(*idx)] += alpha1*(*v); y[3*(*idx)+1] += alpha2*(*v); y[3*(*idx)+2] += alpha3*(*v); idx++; v++; } } ierr = PetscLogFlops(6*a->nz - 3*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_3" PetscErrorCode MatMultAdd_SeqMAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_3" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_3(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[3*i]; alpha2 = x[3*i+1]; alpha3 = x[3*i+2]; while (n-->0) { y[3*(*idx)] += alpha1*(*v); y[3*(*idx)+1] += alpha2*(*v); y[3*(*idx)+2] += alpha3*(*v); idx++; v++; } } ierr = PetscLogFlops(6*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_4" PetscErrorCode MatMult_SeqMAIJ_4(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 4*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_4" PetscErrorCode MatMultTranspose_SeqMAIJ_4(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[4*i]; alpha2 = x[4*i+1]; alpha3 = x[4*i+2]; alpha4 = x[4*i+3]; while (n-->0) { y[4*(*idx)] += alpha1*(*v); y[4*(*idx)+1] += alpha2*(*v); y[4*(*idx)+2] += alpha3*(*v); y[4*(*idx)+3] += alpha4*(*v); idx++; v++; } } ierr = PetscLogFlops(8*a->nz - 4*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_4" PetscErrorCode MatMultAdd_SeqMAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 4*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_4" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_4(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[4*i]; alpha2 = x[4*i+1]; alpha3 = x[4*i+2]; alpha4 = x[4*i+3]; while (n-->0) { y[4*(*idx)] += alpha1*(*v); y[4*(*idx)+1] += alpha2*(*v); y[4*(*idx)+2] += alpha3*(*v); y[4*(*idx)+3] += alpha4*(*v); idx++; v++; } } ierr = PetscLogFlops(8*a->nz - 4*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_5" PetscErrorCode MatMult_SeqMAIJ_5(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 5*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_5" PetscErrorCode MatMultTranspose_SeqMAIJ_5(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[5*i]; alpha2 = x[5*i+1]; alpha3 = x[5*i+2]; alpha4 = x[5*i+3]; alpha5 = x[5*i+4]; while (n-->0) { y[5*(*idx)] += alpha1*(*v); y[5*(*idx)+1] += alpha2*(*v); y[5*(*idx)+2] += alpha3*(*v); y[5*(*idx)+3] += alpha4*(*v); y[5*(*idx)+4] += alpha5*(*v); idx++; v++; } } ierr = PetscLogFlops(10*a->nz - 5*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_5" PetscErrorCode MatMultAdd_SeqMAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_5" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_5(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[5*i]; alpha2 = x[5*i+1]; alpha3 = x[5*i+2]; alpha4 = x[5*i+3]; alpha5 = x[5*i+4]; while (n-->0) { y[5*(*idx)] += alpha1*(*v); y[5*(*idx)+1] += alpha2*(*v); y[5*(*idx)+2] += alpha3*(*v); y[5*(*idx)+3] += alpha4*(*v); y[5*(*idx)+4] += alpha5*(*v); idx++; v++; } } ierr = PetscLogFlops(10*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_6" PetscErrorCode MatMult_SeqMAIJ_6(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 6*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_6" PetscErrorCode MatMultTranspose_SeqMAIJ_6(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[6*i]; alpha2 = x[6*i+1]; alpha3 = x[6*i+2]; alpha4 = x[6*i+3]; alpha5 = x[6*i+4]; alpha6 = x[6*i+5]; while (n-->0) { y[6*(*idx)] += alpha1*(*v); y[6*(*idx)+1] += alpha2*(*v); y[6*(*idx)+2] += alpha3*(*v); y[6*(*idx)+3] += alpha4*(*v); y[6*(*idx)+4] += alpha5*(*v); y[6*(*idx)+5] += alpha6*(*v); idx++; v++; } } ierr = PetscLogFlops(12*a->nz - 6*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_6" PetscErrorCode MatMultAdd_SeqMAIJ_6(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_6" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_6(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[6*i]; alpha2 = x[6*i+1]; alpha3 = x[6*i+2]; alpha4 = x[6*i+3]; alpha5 = x[6*i+4]; alpha6 = x[6*i+5]; while (n-->0) { y[6*(*idx)] += alpha1*(*v); y[6*(*idx)+1] += alpha2*(*v); y[6*(*idx)+2] += alpha3*(*v); y[6*(*idx)+3] += alpha4*(*v); y[6*(*idx)+4] += alpha5*(*v); y[6*(*idx)+5] += alpha6*(*v); idx++; v++; } } ierr = PetscLogFlops(12*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_7" PetscErrorCode MatMult_SeqMAIJ_7(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 7*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_7" PetscErrorCode MatMultTranspose_SeqMAIJ_7(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[7*i]; alpha2 = x[7*i+1]; alpha3 = x[7*i+2]; alpha4 = x[7*i+3]; alpha5 = x[7*i+4]; alpha6 = x[7*i+5]; alpha7 = x[7*i+6]; while (n-->0) { y[7*(*idx)] += alpha1*(*v); y[7*(*idx)+1] += alpha2*(*v); y[7*(*idx)+2] += alpha3*(*v); y[7*(*idx)+3] += alpha4*(*v); y[7*(*idx)+4] += alpha5*(*v); y[7*(*idx)+5] += alpha6*(*v); y[7*(*idx)+6] += alpha7*(*v); idx++; v++; } } ierr = PetscLogFlops(14*a->nz - 7*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_7" PetscErrorCode MatMultAdd_SeqMAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_7" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_7(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[7*i]; alpha2 = x[7*i+1]; alpha3 = x[7*i+2]; alpha4 = x[7*i+3]; alpha5 = x[7*i+4]; alpha6 = x[7*i+5]; alpha7 = x[7*i+6]; while (n-->0) { y[7*(*idx)] += alpha1*(*v); y[7*(*idx)+1] += alpha2*(*v); y[7*(*idx)+2] += alpha3*(*v); y[7*(*idx)+3] += alpha4*(*v); y[7*(*idx)+4] += alpha5*(*v); y[7*(*idx)+5] += alpha6*(*v); y[7*(*idx)+6] += alpha7*(*v); idx++; v++; } } ierr = PetscLogFlops(14*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_8" PetscErrorCode MatMult_SeqMAIJ_8(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 8*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_8" PetscErrorCode MatMultTranspose_SeqMAIJ_8(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[8*i]; alpha2 = x[8*i+1]; alpha3 = x[8*i+2]; alpha4 = x[8*i+3]; alpha5 = x[8*i+4]; alpha6 = x[8*i+5]; alpha7 = x[8*i+6]; alpha8 = x[8*i+7]; while (n-->0) { y[8*(*idx)] += alpha1*(*v); y[8*(*idx)+1] += alpha2*(*v); y[8*(*idx)+2] += alpha3*(*v); y[8*(*idx)+3] += alpha4*(*v); y[8*(*idx)+4] += alpha5*(*v); y[8*(*idx)+5] += alpha6*(*v); y[8*(*idx)+6] += alpha7*(*v); y[8*(*idx)+7] += alpha8*(*v); idx++; v++; } } ierr = PetscLogFlops(16*a->nz - 8*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_8" PetscErrorCode MatMultAdd_SeqMAIJ_8(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_8" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_8(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[8*i]; alpha2 = x[8*i+1]; alpha3 = x[8*i+2]; alpha4 = x[8*i+3]; alpha5 = x[8*i+4]; alpha6 = x[8*i+5]; alpha7 = x[8*i+6]; alpha8 = x[8*i+7]; while (n-->0) { y[8*(*idx)] += alpha1*(*v); y[8*(*idx)+1] += alpha2*(*v); y[8*(*idx)+2] += alpha3*(*v); y[8*(*idx)+3] += alpha4*(*v); y[8*(*idx)+4] += alpha5*(*v); y[8*(*idx)+5] += alpha6*(*v); y[8*(*idx)+6] += alpha7*(*v); y[8*(*idx)+7] += alpha8*(*v); idx++; v++; } } ierr = PetscLogFlops(16*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_9" PetscErrorCode MatMult_SeqMAIJ_9(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 9*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_9" PetscErrorCode MatMultTranspose_SeqMAIJ_9(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[9*i]; alpha2 = x[9*i+1]; alpha3 = x[9*i+2]; alpha4 = x[9*i+3]; alpha5 = x[9*i+4]; alpha6 = x[9*i+5]; alpha7 = x[9*i+6]; alpha8 = x[9*i+7]; alpha9 = x[9*i+8]; while (n-->0) { y[9*(*idx)] += alpha1*(*v); y[9*(*idx)+1] += alpha2*(*v); y[9*(*idx)+2] += alpha3*(*v); y[9*(*idx)+3] += alpha4*(*v); y[9*(*idx)+4] += alpha5*(*v); y[9*(*idx)+5] += alpha6*(*v); y[9*(*idx)+6] += alpha7*(*v); y[9*(*idx)+7] += alpha8*(*v); y[9*(*idx)+8] += alpha9*(*v); idx++; v++; } } ierr = PetscLogFlops(18*a->nz - 9*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_9" PetscErrorCode MatMultAdd_SeqMAIJ_9(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_9" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_9(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[9*i]; alpha2 = x[9*i+1]; alpha3 = x[9*i+2]; alpha4 = x[9*i+3]; alpha5 = x[9*i+4]; alpha6 = x[9*i+5]; alpha7 = x[9*i+6]; alpha8 = x[9*i+7]; alpha9 = x[9*i+8]; while (n-->0) { y[9*(*idx)] += alpha1*(*v); y[9*(*idx)+1] += alpha2*(*v); y[9*(*idx)+2] += alpha3*(*v); y[9*(*idx)+3] += alpha4*(*v); y[9*(*idx)+4] += alpha5*(*v); y[9*(*idx)+5] += alpha6*(*v); y[9*(*idx)+6] += alpha7*(*v); y[9*(*idx)+7] += alpha8*(*v); y[9*(*idx)+8] += alpha9*(*v); idx++; v++; } } ierr = PetscLogFlops(18*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*--------------------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_10" PetscErrorCode MatMult_SeqMAIJ_10(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 10*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_10" PetscErrorCode MatMultAdd_SeqMAIJ_10(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8, sum9, sum10; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 10*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_10" PetscErrorCode MatMultTranspose_SeqMAIJ_10(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10,zero = 0.0; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[10*i]; alpha2 = x[10*i+1]; alpha3 = x[10*i+2]; alpha4 = x[10*i+3]; alpha5 = x[10*i+4]; alpha6 = x[10*i+5]; alpha7 = x[10*i+6]; alpha8 = x[10*i+7]; alpha9 = x[10*i+8]; alpha10 = x[10*i+9]; while (n-->0) { y[10*(*idx)] += alpha1*(*v); y[10*(*idx)+1] += alpha2*(*v); y[10*(*idx)+2] += alpha3*(*v); y[10*(*idx)+3] += alpha4*(*v); y[10*(*idx)+4] += alpha5*(*v); y[10*(*idx)+5] += alpha6*(*v); y[10*(*idx)+6] += alpha7*(*v); y[10*(*idx)+7] += alpha8*(*v); y[10*(*idx)+8] += alpha9*(*v); y[10*(*idx)+9] += alpha10*(*v); idx++; v++; } } ierr = PetscLogFlops(20*a->nz - 10*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_10" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_10(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,alpha9,alpha10; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[10*i]; alpha2 = x[10*i+1]; alpha3 = x[10*i+2]; alpha4 = x[10*i+3]; alpha5 = x[10*i+4]; alpha6 = x[10*i+5]; alpha7 = x[10*i+6]; alpha8 = x[10*i+7]; alpha9 = x[10*i+8]; alpha10 = x[10*i+9]; while (n-->0) { y[10*(*idx)] += alpha1*(*v); y[10*(*idx)+1] += alpha2*(*v); y[10*(*idx)+2] += alpha3*(*v); y[10*(*idx)+3] += alpha4*(*v); y[10*(*idx)+4] += alpha5*(*v); y[10*(*idx)+5] += alpha6*(*v); y[10*(*idx)+6] += alpha7*(*v); y[10*(*idx)+7] += alpha8*(*v); y[10*(*idx)+8] += alpha9*(*v); y[10*(*idx)+9] += alpha10*(*v); idx++; v++; } } ierr = PetscLogFlops(20*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*--------------------------------------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_SeqMAIJ_16" PetscErrorCode MatMult_SeqMAIJ_16(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz - 16*m);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_SeqMAIJ_16" PetscErrorCode MatMultTranspose_SeqMAIJ_16(Mat A,Vec xx,Vec yy) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8,zero = 0.0; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; ierr = VecSet(yy,zero);CHKERRQ(ierr); ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(yy,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[16*i]; alpha2 = x[16*i+1]; alpha3 = x[16*i+2]; alpha4 = x[16*i+3]; alpha5 = x[16*i+4]; alpha6 = x[16*i+5]; alpha7 = x[16*i+6]; alpha8 = x[16*i+7]; alpha9 = x[16*i+8]; alpha10 = x[16*i+9]; alpha11 = x[16*i+10]; alpha12 = x[16*i+11]; alpha13 = x[16*i+12]; alpha14 = x[16*i+13]; alpha15 = x[16*i+14]; alpha16 = x[16*i+15]; while (n-->0) { y[16*(*idx)] += alpha1*(*v); y[16*(*idx)+1] += alpha2*(*v); y[16*(*idx)+2] += alpha3*(*v); y[16*(*idx)+3] += alpha4*(*v); y[16*(*idx)+4] += alpha5*(*v); y[16*(*idx)+5] += alpha6*(*v); y[16*(*idx)+6] += alpha7*(*v); y[16*(*idx)+7] += alpha8*(*v); y[16*(*idx)+8] += alpha9*(*v); y[16*(*idx)+9] += alpha10*(*v); y[16*(*idx)+10] += alpha11*(*v); y[16*(*idx)+11] += alpha12*(*v); y[16*(*idx)+12] += alpha13*(*v); y[16*(*idx)+13] += alpha14*(*v); y[16*(*idx)+14] += alpha15*(*v); y[16*(*idx)+15] += alpha16*(*v); idx++; v++; } } ierr = PetscLogFlops(32*a->nz - 16*b->AIJ->cmap.n);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(yy,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_SeqMAIJ_16" PetscErrorCode MatMultAdd_SeqMAIJ_16(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,sum1, sum2, sum3, sum4, sum5, sum6, sum7, sum8; PetscScalar sum9, sum10, sum11, sum12, sum13, sum14, sum15, sum16; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,*idx,*ii; PetscInt n,i,jrow,j; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); idx = a->j; v = a->a; ii = a->i; for (i=0; inz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_SeqMAIJ_16" PetscErrorCode MatMultTransposeAdd_SeqMAIJ_16(Mat A,Vec xx,Vec yy,Vec zz) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat_SeqAIJ *a = (Mat_SeqAIJ*)b->AIJ->data; PetscScalar *x,*y,*v,alpha1,alpha2,alpha3,alpha4,alpha5,alpha6,alpha7,alpha8; PetscScalar alpha9,alpha10,alpha11,alpha12,alpha13,alpha14,alpha15,alpha16; PetscErrorCode ierr; PetscInt m = b->AIJ->rmap.n,n,i,*idx; PetscFunctionBegin; if (yy != zz) {ierr = VecCopy(yy,zz);CHKERRQ(ierr);} ierr = VecGetArray(xx,&x);CHKERRQ(ierr); ierr = VecGetArray(zz,&y);CHKERRQ(ierr); for (i=0; ij + a->i[i] ; v = a->a + a->i[i] ; n = a->i[i+1] - a->i[i]; alpha1 = x[16*i]; alpha2 = x[16*i+1]; alpha3 = x[16*i+2]; alpha4 = x[16*i+3]; alpha5 = x[16*i+4]; alpha6 = x[16*i+5]; alpha7 = x[16*i+6]; alpha8 = x[16*i+7]; alpha9 = x[16*i+8]; alpha10 = x[16*i+9]; alpha11 = x[16*i+10]; alpha12 = x[16*i+11]; alpha13 = x[16*i+12]; alpha14 = x[16*i+13]; alpha15 = x[16*i+14]; alpha16 = x[16*i+15]; while (n-->0) { y[16*(*idx)] += alpha1*(*v); y[16*(*idx)+1] += alpha2*(*v); y[16*(*idx)+2] += alpha3*(*v); y[16*(*idx)+3] += alpha4*(*v); y[16*(*idx)+4] += alpha5*(*v); y[16*(*idx)+5] += alpha6*(*v); y[16*(*idx)+6] += alpha7*(*v); y[16*(*idx)+7] += alpha8*(*v); y[16*(*idx)+8] += alpha9*(*v); y[16*(*idx)+9] += alpha10*(*v); y[16*(*idx)+10] += alpha11*(*v); y[16*(*idx)+11] += alpha12*(*v); y[16*(*idx)+12] += alpha13*(*v); y[16*(*idx)+13] += alpha14*(*v); y[16*(*idx)+14] += alpha15*(*v); y[16*(*idx)+15] += alpha16*(*v); idx++; v++; } } ierr = PetscLogFlops(32*a->nz);CHKERRQ(ierr); ierr = VecRestoreArray(xx,&x);CHKERRQ(ierr); ierr = VecRestoreArray(zz,&y);CHKERRQ(ierr); PetscFunctionReturn(0); } /*===================================================================================*/ #undef __FUNCT__ #define __FUNCT__ "MatMult_MPIMAIJ_dof" PetscErrorCode MatMult_MPIMAIJ_dof(Mat A,Vec xx,Vec yy) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; /* start the scatter */ ierr = VecScatterBegin(xx,b->w,INSERT_VALUES,SCATTER_FORWARD,b->ctx);CHKERRQ(ierr); ierr = (*b->AIJ->ops->mult)(b->AIJ,xx,yy);CHKERRQ(ierr); ierr = VecScatterEnd(xx,b->w,INSERT_VALUES,SCATTER_FORWARD,b->ctx);CHKERRQ(ierr); ierr = (*b->OAIJ->ops->multadd)(b->OAIJ,b->w,yy,yy);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTranspose_MPIMAIJ_dof" PetscErrorCode MatMultTranspose_MPIMAIJ_dof(Mat A,Vec xx,Vec yy) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = (*b->OAIJ->ops->multtranspose)(b->OAIJ,xx,b->w);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multtranspose)(b->AIJ,xx,yy);CHKERRQ(ierr); ierr = VecScatterBegin(b->w,yy,ADD_VALUES,SCATTER_REVERSE,b->ctx);CHKERRQ(ierr); ierr = VecScatterEnd(b->w,yy,ADD_VALUES,SCATTER_REVERSE,b->ctx);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultAdd_MPIMAIJ_dof" PetscErrorCode MatMultAdd_MPIMAIJ_dof(Mat A,Vec xx,Vec yy,Vec zz) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; /* start the scatter */ ierr = VecScatterBegin(xx,b->w,INSERT_VALUES,SCATTER_FORWARD,b->ctx);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multadd)(b->AIJ,xx,yy,zz);CHKERRQ(ierr); ierr = VecScatterEnd(xx,b->w,INSERT_VALUES,SCATTER_FORWARD,b->ctx);CHKERRQ(ierr); ierr = (*b->OAIJ->ops->multadd)(b->OAIJ,b->w,zz,zz);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatMultTransposeAdd_MPIMAIJ_dof" PetscErrorCode MatMultTransposeAdd_MPIMAIJ_dof(Mat A,Vec xx,Vec yy,Vec zz) { Mat_MPIMAIJ *b = (Mat_MPIMAIJ*)A->data; PetscErrorCode ierr; PetscFunctionBegin; ierr = (*b->OAIJ->ops->multtranspose)(b->OAIJ,xx,b->w);CHKERRQ(ierr); ierr = VecScatterBegin(b->w,zz,ADD_VALUES,SCATTER_REVERSE,b->ctx);CHKERRQ(ierr); ierr = (*b->AIJ->ops->multtransposeadd)(b->AIJ,xx,yy,zz);CHKERRQ(ierr); ierr = VecScatterEnd(b->w,zz,ADD_VALUES,SCATTER_REVERSE,b->ctx);CHKERRQ(ierr); PetscFunctionReturn(0); } /* ----------------------------------------------------------------*/ #undef __FUNCT__ #define __FUNCT__ "MatPtAPSymbolic_SeqAIJ_SeqMAIJ" PetscErrorCode MatPtAPSymbolic_SeqAIJ_SeqMAIJ(Mat A,Mat PP,PetscReal fill,Mat *C) { /* This routine requires testing -- but it's getting better. */ PetscErrorCode ierr; PetscFreeSpaceList free_space=PETSC_NULL,current_space=PETSC_NULL; Mat_SeqMAIJ *pp=(Mat_SeqMAIJ*)PP->data; Mat P=pp->AIJ; Mat_SeqAIJ *a=(Mat_SeqAIJ*)A->data,*p=(Mat_SeqAIJ*)P->data,*c; PetscInt *pti,*ptj,*ptJ,*ai=a->i,*aj=a->j,*ajj,*pi=p->i,*pj=p->j,*pjj; PetscInt *ci,*cj,*ptadenserow,*ptasparserow,*denserow,*sparserow,*ptaj; PetscInt an=A->cmap.N,am=A->rmap.N,pn=P->cmap.N,pm=P->rmap.N,ppdof=pp->dof,cn; PetscInt i,j,k,dof,pshift,ptnzi,arow,anzj,ptanzi,prow,pnzj,cnzi; MatScalar *ca; PetscFunctionBegin; /* Start timer */ ierr = PetscLogEventBegin(MAT_PtAPSymbolic,A,PP,0,0);CHKERRQ(ierr); /* Get ij structure of P^T */ ierr = MatGetSymbolicTranspose_SeqAIJ(P,&pti,&ptj);CHKERRQ(ierr); cn = pn*ppdof; /* Allocate ci array, arrays for fill computation and */ /* free space for accumulating nonzero column info */ ierr = PetscMalloc((cn+1)*sizeof(PetscInt),&ci);CHKERRQ(ierr); ci[0] = 0; /* Work arrays for rows of P^T*A */ ierr = PetscMalloc((2*cn+2*an+1)*sizeof(PetscInt),&ptadenserow);CHKERRQ(ierr); ierr = PetscMemzero(ptadenserow,(2*cn+2*an+1)*sizeof(PetscInt));CHKERRQ(ierr); ptasparserow = ptadenserow + an; denserow = ptasparserow + an; sparserow = denserow + cn; /* Set initial free space to be nnz(A) scaled by aspect ratio of P. */ /* This should be reasonable if sparsity of PtAP is similar to that of A. */ /* Note, aspect ratio of P is the same as the aspect ratio of SeqAIJ inside P */ ierr = PetscFreeSpaceGet((ai[am]/pm)*pn,&free_space); current_space = free_space; /* Determine symbolic info for each row of C: */ for (i=0;ilocal_remainingtotal_array_size,¤t_space);CHKERRQ(ierr); } /* Copy data into free space, and zero out denserows */ ierr = PetscMemcpy(current_space->array,sparserow,cnzi*sizeof(PetscInt));CHKERRQ(ierr); current_space->array += cnzi; current_space->local_used += cnzi; current_space->local_remaining -= cnzi; for (j=0;jcomm,cn,cn,ci,cj,ca,C);CHKERRQ(ierr); /* MatCreateSeqAIJWithArrays flags matrix so PETSc doesn't free the user's arrays. */ /* Since these are PETSc arrays, change flags to free them as necessary. */ c = (Mat_SeqAIJ *)((*C)->data); c->free_a = PETSC_TRUE; c->free_ij = PETSC_TRUE; c->nonew = 0; /* Clean up. */ ierr = MatRestoreSymbolicTranspose_SeqAIJ(P,&pti,&ptj);CHKERRQ(ierr); ierr = PetscLogEventEnd(MAT_PtAPSymbolic,A,PP,0,0);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatPtAPNumeric_SeqAIJ_SeqMAIJ" PetscErrorCode MatPtAPNumeric_SeqAIJ_SeqMAIJ(Mat A,Mat PP,Mat C) { /* This routine requires testing -- first draft only */ PetscErrorCode ierr; PetscInt flops=0; Mat_SeqMAIJ *pp=(Mat_SeqMAIJ*)PP->data; Mat P=pp->AIJ; Mat_SeqAIJ *a = (Mat_SeqAIJ *) A->data; Mat_SeqAIJ *p = (Mat_SeqAIJ *) P->data; Mat_SeqAIJ *c = (Mat_SeqAIJ *) C->data; PetscInt *ai=a->i,*aj=a->j,*apj,*apjdense,*pi=p->i,*pj=p->j,*pJ=p->j,*pjj; PetscInt *ci=c->i,*cj=c->j,*cjj; PetscInt am=A->rmap.N,cn=C->cmap.N,cm=C->rmap.N,ppdof=pp->dof; PetscInt i,j,k,pshift,poffset,anzi,pnzi,apnzj,nextap,pnzj,prow,crow; MatScalar *aa=a->a,*apa,*pa=p->a,*pA=p->a,*paj,*ca=c->a,*caj; PetscFunctionBegin; /* Allocate temporary array for storage of one row of A*P */ ierr = PetscMalloc(cn*(sizeof(MatScalar)+2*sizeof(PetscInt)),&apa);CHKERRQ(ierr); ierr = PetscMemzero(apa,cn*(sizeof(MatScalar)+2*sizeof(PetscInt)));CHKERRQ(ierr); apj = (PetscInt *)(apa + cn); apjdense = apj + cn; /* Clear old values in C */ ierr = PetscMemzero(ca,ci[cm]*sizeof(MatScalar));CHKERRQ(ierr); for (i=0;iops->ptapsymbolic)(A,PP,fill,C);CHKERRQ(ierr); PetscFunctionReturn(0); } #undef __FUNCT__ #define __FUNCT__ "MatPtAPNumeric_MPIAIJ_MPIMAIJ" PetscErrorCode MatPtAPNumeric_MPIAIJ_MPIMAIJ(Mat A,Mat PP,Mat C) { PetscFunctionBegin; SETERRQ(PETSC_ERR_SUP,"MatPtAPNumeric is not implemented for MPIMAIJ matrix yet"); PetscFunctionReturn(0); } EXTERN_C_BEGIN #undef __FUNCT__ #define __FUNCT__ "MatConvert_SeqMAIJ_SeqAIJ" PetscErrorCode PETSCMAT_DLLEXPORT MatConvert_SeqMAIJ_SeqAIJ(Mat A, MatType newtype,MatReuse reuse,Mat *newmat) { Mat_SeqMAIJ *b = (Mat_SeqMAIJ*)A->data; Mat a = b->AIJ,B; Mat_SeqAIJ *aij = (Mat_SeqAIJ*)a->data; PetscErrorCode ierr; PetscInt m,n,i,ncols,*ilen,nmax = 0,*icols,j,k,ii,dof = b->dof; PetscInt *cols; PetscScalar *vals; PetscFunctionBegin; ierr = MatGetSize(a,&m,&n);CHKERRQ(ierr); ierr = PetscMalloc(dof*m*sizeof(PetscInt),&ilen);CHKERRQ(ierr); for (i=0; iilen[i]); for (j=0; jilen[i]; } } ierr = MatCreateSeqAIJ(PETSC_COMM_SELF,dof*m,dof*n,0,ilen,&B);CHKERRQ(ierr); ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); ierr = PetscFree(ilen);CHKERRQ(ierr); ierr = PetscMalloc(nmax*sizeof(PetscInt),&icols);CHKERRQ(ierr); ii = 0; for (i=0; idata; Mat MatAIJ = ((Mat_SeqMAIJ*)maij->AIJ->data)->AIJ,B; Mat MatOAIJ = ((Mat_SeqMAIJ*)maij->OAIJ->data)->AIJ; Mat_SeqAIJ *AIJ = (Mat_SeqAIJ*) MatAIJ->data; Mat_SeqAIJ *OAIJ =(Mat_SeqAIJ*) MatOAIJ->data; Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ*) maij->A->data; PetscInt dof = maij->dof,i,j,*dnz = PETSC_NULL,*onz = PETSC_NULL,nmax = 0,onmax = 0; PetscInt *oicols = PETSC_NULL,*icols = PETSC_NULL,ncols,*cols = PETSC_NULL,oncols,*ocols = PETSC_NULL; PetscInt rstart,cstart,*garray,ii,k; PetscErrorCode ierr; PetscScalar *vals,*ovals; PetscFunctionBegin; ierr = PetscMalloc2(A->rmap.n,PetscInt,&dnz,A->rmap.n,PetscInt,&onz);CHKERRQ(ierr); for (i=0; irmap.n/dof; i++) { nmax = PetscMax(nmax,AIJ->ilen[i]); onmax = PetscMax(onmax,OAIJ->ilen[i]); for (j=0; jilen[i]; onz[dof*i+j] = OAIJ->ilen[i]; } } ierr = MatCreateMPIAIJ(A->comm,A->rmap.n,A->cmap.n,A->rmap.N,A->cmap.N,0,dnz,0,onz,&B);CHKERRQ(ierr); ierr = MatSetOption(B,MAT_COLUMNS_SORTED);CHKERRQ(ierr); ierr = PetscFree2(dnz,onz);CHKERRQ(ierr); ierr = PetscMalloc2(nmax,PetscInt,&icols,onmax,PetscInt,&oicols);CHKERRQ(ierr); rstart = dof*maij->A->rmap.rstart; cstart = dof*maij->A->cmap.rstart; garray = mpiaij->garray; ii = rstart; for (i=0; irmap.n/dof; i++) { ierr = MatGetRow_SeqAIJ(MatAIJ,i,&ncols,&cols,&vals);CHKERRQ(ierr); ierr = MatGetRow_SeqAIJ(MatOAIJ,i,&oncols,&ocols,&ovals);CHKERRQ(ierr); for (j=0; jrefct; /* save A->refct */ A->refct = 1; ierr = MatHeaderReplace(A,B);CHKERRQ(ierr); A->refct = refct; /* restore A->refct */ } else { *newmat = B; } PetscFunctionReturn(0); } EXTERN_C_END /* ---------------------------------------------------------------------------------- */ /*MC MatCreateMAIJ - Creates a matrix type providing restriction and interpolation operations for multicomponent problems. It interpolates each component the same way independently. The matrix type is based on MATSEQAIJ for sequential matrices, and MATMPIAIJ for distributed matrices. Operations provided: + MatMult . MatMultTranspose . MatMultAdd . MatMultTransposeAdd - MatView Level: advanced M*/ #undef __FUNCT__ #define __FUNCT__ "MatCreateMAIJ" PetscErrorCode PETSCMAT_DLLEXPORT MatCreateMAIJ(Mat A,PetscInt dof,Mat *maij) { PetscErrorCode ierr; PetscMPIInt size; PetscInt n; Mat_MPIMAIJ *b; Mat B; PetscFunctionBegin; ierr = PetscObjectReference((PetscObject)A);CHKERRQ(ierr); if (dof == 1) { *maij = A; } else { ierr = MatCreate(A->comm,&B);CHKERRQ(ierr); ierr = MatSetSizes(B,dof*A->rmap.n,dof*A->cmap.n,dof*A->rmap.N,dof*A->cmap.N);CHKERRQ(ierr); B->assembled = PETSC_TRUE; ierr = MPI_Comm_size(A->comm,&size);CHKERRQ(ierr); if (size == 1) { ierr = MatSetType(B,MATSEQMAIJ);CHKERRQ(ierr); B->ops->destroy = MatDestroy_SeqMAIJ; B->ops->view = MatView_SeqMAIJ; b = (Mat_MPIMAIJ*)B->data; b->dof = dof; b->AIJ = A; if (dof == 2) { B->ops->mult = MatMult_SeqMAIJ_2; B->ops->multadd = MatMultAdd_SeqMAIJ_2; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_2; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_2; } else if (dof == 3) { B->ops->mult = MatMult_SeqMAIJ_3; B->ops->multadd = MatMultAdd_SeqMAIJ_3; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_3; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_3; } else if (dof == 4) { B->ops->mult = MatMult_SeqMAIJ_4; B->ops->multadd = MatMultAdd_SeqMAIJ_4; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_4; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_4; } else if (dof == 5) { B->ops->mult = MatMult_SeqMAIJ_5; B->ops->multadd = MatMultAdd_SeqMAIJ_5; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_5; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_5; } else if (dof == 6) { B->ops->mult = MatMult_SeqMAIJ_6; B->ops->multadd = MatMultAdd_SeqMAIJ_6; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_6; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_6; } else if (dof == 7) { B->ops->mult = MatMult_SeqMAIJ_7; B->ops->multadd = MatMultAdd_SeqMAIJ_7; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_7; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_7; } else if (dof == 8) { B->ops->mult = MatMult_SeqMAIJ_8; B->ops->multadd = MatMultAdd_SeqMAIJ_8; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_8; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_8; } else if (dof == 9) { B->ops->mult = MatMult_SeqMAIJ_9; B->ops->multadd = MatMultAdd_SeqMAIJ_9; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_9; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_9; } else if (dof == 10) { B->ops->mult = MatMult_SeqMAIJ_10; B->ops->multadd = MatMultAdd_SeqMAIJ_10; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_10; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_10; } else if (dof == 16) { B->ops->mult = MatMult_SeqMAIJ_16; B->ops->multadd = MatMultAdd_SeqMAIJ_16; B->ops->multtranspose = MatMultTranspose_SeqMAIJ_16; B->ops->multtransposeadd = MatMultTransposeAdd_SeqMAIJ_16; } else { SETERRQ1(PETSC_ERR_SUP,"Cannot handle a dof of %D. Send request for code to petsc-maint@mcs.anl.gov\n",dof); } B->ops->ptapsymbolic_seqaij = MatPtAPSymbolic_SeqAIJ_SeqMAIJ; B->ops->ptapnumeric_seqaij = MatPtAPNumeric_SeqAIJ_SeqMAIJ; ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_seqmaij_seqaij_C","MatConvert_SeqMAIJ_SeqAIJ",MatConvert_SeqMAIJ_SeqAIJ);CHKERRQ(ierr); } else { Mat_MPIAIJ *mpiaij = (Mat_MPIAIJ *)A->data; IS from,to; Vec gvec; PetscInt *garray,i; ierr = MatSetType(B,MATMPIMAIJ);CHKERRQ(ierr); B->ops->destroy = MatDestroy_MPIMAIJ; B->ops->view = MatView_MPIMAIJ; b = (Mat_MPIMAIJ*)B->data; b->dof = dof; b->A = A; ierr = MatCreateMAIJ(mpiaij->A,dof,&b->AIJ);CHKERRQ(ierr); ierr = MatCreateMAIJ(mpiaij->B,dof,&b->OAIJ);CHKERRQ(ierr); ierr = VecGetSize(mpiaij->lvec,&n);CHKERRQ(ierr); ierr = VecCreateSeq(PETSC_COMM_SELF,n*dof,&b->w);CHKERRQ(ierr); ierr = VecSetBlockSize(b->w,dof);CHKERRQ(ierr); /* create two temporary Index sets for build scatter gather */ ierr = PetscMalloc((n+1)*sizeof(PetscInt),&garray);CHKERRQ(ierr); for (i=0; igarray[i]; ierr = ISCreateBlock(A->comm,dof,n,garray,&from);CHKERRQ(ierr); ierr = PetscFree(garray);CHKERRQ(ierr); ierr = ISCreateStride(PETSC_COMM_SELF,n*dof,0,1,&to);CHKERRQ(ierr); /* create temporary global vector to generate scatter context */ ierr = VecCreateMPI(A->comm,dof*A->cmap.n,dof*A->cmap.N,&gvec);CHKERRQ(ierr); ierr = VecSetBlockSize(gvec,dof);CHKERRQ(ierr); /* generate the scatter context */ ierr = VecScatterCreate(gvec,from,b->w,to,&b->ctx);CHKERRQ(ierr); ierr = ISDestroy(from);CHKERRQ(ierr); ierr = ISDestroy(to);CHKERRQ(ierr); ierr = VecDestroy(gvec);CHKERRQ(ierr); B->ops->mult = MatMult_MPIMAIJ_dof; B->ops->multtranspose = MatMultTranspose_MPIMAIJ_dof; B->ops->multadd = MatMultAdd_MPIMAIJ_dof; B->ops->multtransposeadd = MatMultTransposeAdd_MPIMAIJ_dof; B->ops->ptapsymbolic_mpiaij = MatPtAPSymbolic_MPIAIJ_MPIMAIJ; B->ops->ptapnumeric_mpiaij = MatPtAPNumeric_MPIAIJ_MPIMAIJ; ierr = PetscObjectComposeFunctionDynamic((PetscObject)B,"MatConvert_mpimaij_mpiaij_C","MatConvert_MPIMAIJ_MPIAIJ",MatConvert_MPIMAIJ_MPIAIJ);CHKERRQ(ierr); } *maij = B; ierr = MatView_Private(B);CHKERRQ(ierr); } PetscFunctionReturn(0); }