==>runtrx start: date: Mon Jun 2 19:34:24 EDT 2025 ( mccune002.pppl.gov ) argv = 2 iarg = 2 cmd_opt = pre runtrx: tok.yy = D3D.24 ==========(runtrx)====================== date: Mon Jun 2 19:34:24 EDT 2025 ( mccune002.pppl.gov ) args: 200730H02 pre ==========(runtrx)====================== ==========(runtrx)====================== ==========TRANSP preprocessing========== date: Mon Jun 2 19:34:24 EDT 2025 ( mccune002.pppl.gov ) ==========check for 200730H02_mdsmark.sh=== ==========(runtrx)====================== ==========TRDAT execution=============== date: Mon Jun 2 19:34:24 EDT 2025 ( mccune002.pppl.gov ) TRDAT TRANSP Version: 24.0.1 TRANSP DOI: 10.11578/dc.20180627.4 Build Date: 2023/10/21 %trmpi_init.f90: LOG_LEVEL env. var.: 1 %trmpi_init.f90: logfile_level: warn (mpi_share_env) process myid= 0 cwd: /local/tr_heidbrin/transp_compute/D3D/200730H02 CTOKNM : Cdir = /local/tr_heidbrin/transp_compute/D3D/200730H02/ % DIRECTORY IS /local/tr_heidbrin/transp_compute/D3D/200730H02/; TOKAMAK ID SET TO D3D %trmpi_openlog: LOGFILE_LEVEL = warn namelist element value field(s): decimal point(s) inserted: FOCLRA FOCLZA DTMINT DTMING PDELTA %NLIST: open namelist file200730H02TR.ZDA %trcom_static_box: loading static data %mds_setup: setting MDSplus server to: TRANSPGRID.PPPL.GOV %mds_setup: server set OK. %mds_setup: MDSplus opening tree: TRANSP_D3D 2007300802 %mds_setup: MDSplus tree open status: 265389633 -----------> entering UF0GET. %UF0DRD: DIMENSIONALITY OF INPUT FILE = 2 % NO. OF BEAMS (NB2 DATA) = 20 %UF0DRD: DIMENSIONALITY OF INPUT FILE = 3 %OK: BTOR_CCW not found, using namelist: nlbccw = F %OK: ITOR_CCW not found, using namelist: nljccw = T %UF0GET -- finished. %DATCHK: TEQ, fixed-boundary DATCHK: CHECKING ARRAY DIMENSIONS, SWITCHES, ETC %DATCHK: NYXINV incremented to be odd: 101 161 %DATCHK: no ECH/ECCD, NLECH=F, %DATCKA: ACfile times pre-screen... %DATCKA -- CHECKING NON-DEFAULT SPECIFICATIONS FOR AC FILE I/O GIVEN IN NAMELIST CHARACTER DATA ARRAYS "SELOUT" AND "SELAVG" %ASCXFIN -- AC FILE OPERATION COMPLETED SUCCESSFULLY. dummy trdatusub vsn trgdat_check called (OK). dummy trdatusub vsn trgdat_psload called (OK). *UTRCHK: CHECKING TRDAT NAMELIST SPECIFICATIONS. %UTRCHK: TEQ, fixed-boundary *DDEFIN: SET UP PHYSICS DATA FOR ANALYSIS: TIME RANGE IS TINIT= 2.8000E-01, FTIME= 2.0000E+00 SECONDS. SETSCD - SET SCALAR DATA FOR UPF SETTIM - SET UP TIMING INFORMATION FOR UPF *UF1GET: PROCESSING "CUR": plasma current amps ------------------- *UF1GET: PROCESSING "RBZ": [ext. B field] * R Tesla*cm ----------- %FIXUNS: CONVERTING UFILE RBZ DATA UNITS, M.T , TO Tesla*cm >CONVERSION FACTOR: * 100.000 *UF1GET: PROCESSING "BDI": beta diamagnetic -------------------- *UF1GET: PROCESSING "DFL": diamagnetic flux Webers --------------- %SETDFLT: "GAS" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, GASFLN = 0.0000E+00 *UF1GET: PROCESSING "L2B": li/2 + beta(pol) -------------------- *UF1GET: PROCESSING "NTX": Neutron flux n/sec -------------------- *UF1GET: PROCESSING "TPI": particle confinement seconds ---------- *UF1GET: PROCESSING "VSF": surface voltage volts ----------------- *UF3GET: PROCESSING "MRY": Moments boundary cm ------------------- Setmom: Interpolate 3-D MRY bdy moments data for UPF %SETMOM: NMOM = 8 SETLIM - SET UP Axisymmetric limiter data for UPF *UF1GET: PROCESSING "LIM": Axisymmetric Limiter cm --------------- %UF1GET: X axis is not the timebase, processing axis units cm %FIXUNS: CONVERTING UFILE LIM TIMEBASE UNITS, M , TO cm >CONVERSION FACTOR: * 100.000 %FIXUNS: CONVERTING UFILE LIM DATA UNITS, M , TO cm >CONVERSION FACTOR: * 100.000 *UF2GET: PROCESSING "BOL": Power radiated W/cm**3 ---------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "NER": electron density n/cm**3 -------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %FIXUNS: CONVERTING UFILE NER DATA UNITS, M**-3 , TO n/cm**3 >CONVERSION FACTOR: *0.100000E-05 %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "NIM": impurity density n/cm**3 -------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %FIXUNS: CONVERTING UFILE NIM DATA UNITS, M**-3 , TO n/cm**3 >CONVERSION FACTOR: *0.100000E-05 %CHKTIM: DATA TIME RANGE 3.0000E-01 TO 2.0000E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "OMG": plasma rotation rad/sec --------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %CHKTIM: DATA TIME RANGE 3.2000E-01 TO 2.0000E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "QPR": q profile --------------------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "TER": electron temperature eV --------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %FIXUNS: CONVERTING UFILE TER DATA UNITS, KEV , TO eV >CONVERSION FACTOR: * 1000.00 %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "TI2": ion temperature eV -------------------- %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %FIXUNS: CONVERTING UFILE TI2 DATA UNITS, KEV , TO eV >CONVERSION FACTOR: * 1000.00 %CHKTIM: DATA TIME RANGE 3.2000E-01 TO 2.0000E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETDAT2-- X axis is normalized flux, not modified, npts=101 *UF2GET: PROCESSING "ZF2": Zeff profile ------------------------ %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "seconds " %CHKTIM: DATA TIME RANGE 3.0000E-01 TO 2.0000E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETDAT2-- X axis is normalized flux, not modified, npts=101 *DDEFIN: Set Plasma Heating parameters :- ========================== -> entering setnbi (neutral beam powers, voltages, etc.) SETNBI - SET UP NEUTRAL BEAM DATA FOR UPF *UF2GET: PROCESSING "NB2": beam heating data ------------------- %SETNBI- BEAM FULL ENERGY FRACTIONS SET BY NBI FILE ** %SETNBI- BEAM HALF ENERGY FRACTIONS SET BY NBI FILE ** %setnbi: NBI on/off times taken from data. %NB_ONOFF: NBI on/off times (s): 2.9980E-01 1.9900E+00 -> entering setlhp (Lower Hybrid powers) ...setting Lower Hybrid powers from namelist Powers vs. time not stored in trdat. Zeff vs. (x,t) only: Zeff vs. (x,t) input data provided. %SETDFLT: "DTG" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DTMAXG = 1.0000E-02 %setmisc -- time dependent geometry timestep enabled (ZOOM is off). %SETDFLT: "DTS" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DT_SOURCES = 1.0000E-03 %setmisc -- time dependent source timestep enabled (ZOOM is off). %SETDFLT: "DTX" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DT_OUTPUT = 5.0000E-03 %setmisc -- time dependent output timestep enabled (ZOOM is off). -------------------------------------------------- %trdat_bdy_check -- checking plasma boundary data trdat_bdy_check: OK ...min(r_curvature/(Rmax-Rmin)) is: 5.204970909561921E-002 ...at time t= 1.87999999999990 seconds. ------------> thermal ion ptcl balance summary: Hydrogen (absent) Deuterium NDEFINE=0 NMODEL=4 RC=Tau(p) GF=ZERO Tritium (absent) Helium-3 (absent) Helium-4 (absent) Lithium-6 (absent) Recycling fractions RFRAC are specified. ------------------------------------ Fast ion summary: Beam species: D Fusion product species: (None) Minority RF species: (None) ------------------------------------ In TRDAT: calling copy_hcd_nml copy_gennml_sub: template fetch via "mds_get_inf" subprocess... COPY_GENNML_SUB: $UFILES_ROOT/bin/mds_get_inf s TRANSPGRID.PPPL.GOV t TRANSP_D3 D r 200730H02 l .NML:GENRAY_LHH q ************************************************************************ Program: mds_get_inf Version: v0.3.2 Revision: 953b182 Date: 03/20/2024 ************************************************************************ mds_get_inf retrievs a text node from a TRANSP run and writes it into a file . or uses TRANSP conventions: name_list -> TR.DAT contents -> TF.PLN mds_shot = 2007300802 mds_conopn: option = 3 2007300802 TRANSP_D3D ...connecting to server: TRANSPGRID.PPPL.GOV mds_shot = 2007300802 .NML:GENRAY_LHH does not exist 1 COPY_GENNML_SUB: failed to extract .NML:GENRAY_LHH (now look for template file). COPY_GENNML_SUB: namelist: GENRAY_LHH_TEMPLATE= "" COPY_GENNML_SUB: GENRAY_LHH_TEMPLATE is blank; Default used COPY_GENNML_SUB: Genray template file= $LOCAL/tables/rf_nml/genray_lhh.in COPY_GENNML_SUB: zcmd= cp $LOCAL/tables/rf_nml/genray_lhh.in ./200730H02_genray_lhh.in COPY_GENNML_SUB: file copy status (0 is normal): 0 ==========(runtrx TRDAT sts = 0)====== ==>runtrx: trdat execution successful will write to mdsplus later ==========LABEL execution=============== date: Mon Jun 2 19:34:28 EDT 2025 ( mccune002.pppl.gov ) ==>runtrx: label execution successful ==========add TF.PLN to MDSplus ======== ==========(runtrx)====================== date: Mon Jun 2 19:34:28 EDT 2025 ( mccune002.pppl.gov ) ************************************************************************ Program: mds_start Version: v0.3.2 Revision: 953b182 Date: 03/20/2024 ************************************************************************ mds_conopn: option = 4 2007300802 TRANSP_D3D ...connecting to server: TRANSPGRID.PPPL.GOV ...tcl("EDIT TRANSP_D3D/SHOT=2007300802") nid = 161 open 200730H02TF.PLN add_file: 9060 lines - 76 tcl("WRITE") stat = 1 ==========add PH.CDF to MDSplus ======== ==========(runtrx)====================== date: Mon Jun 2 19:34:29 EDT 2025 ( mccune002.pppl.gov ) ==>runtrx: LINK_ON_HOST environment variable detected. ==========(runtrx)====================== ==========>runtrx normal exit<========== date: Mon Jun 2 19:34:29 EDT 2025 ( mccune002.pppl.gov )