==>runtrx start: date: Tue Jun 25 14:13:33 EDT 2024 ( mccune001.pppl.gov ) argv = 2 iarg = 2 cmd_opt = pre runtrx: tok.yy = JET.21 ==========(runtrx)====================== date: Tue Jun 25 14:13:33 EDT 2024 ( mccune001.pppl.gov ) args: 99802Y33 pre ==========(runtrx)====================== ==========(runtrx)====================== ==========TRANSP preprocessing========== date: Tue Jun 25 14:13:33 EDT 2024 ( mccune001.pppl.gov ) ==========check for 99802Y33_mdsmark.sh=== ==========(runtrx)====================== ==========TRDAT execution=============== date: Tue Jun 25 14:13:33 EDT 2024 ( mccune001.pppl.gov ) TRDAT TRANSP Version: 24.0.1 TRANSP DOI: 10.11578/dc.20180627.4 Build Date: 2023/10/21 %trmpi_init.f90: LOG_LEVEL env. var.: 1 %trmpi_init.f90: logfile_level: warn (mpi_share_env) process myid= 0 cwd: /local/tr_fauriemm/transp_compute/JET/99802Y33 CTOKNM : Cdir = /local/tr_fauriemm/transp_compute/JET/99802Y33/ % DIRECTORY IS /local/tr_fauriemm/transp_compute/JET/99802Y33/; TOKAMAK ID SET TO JET %trmpi_openlog: LOGFILE_LEVEL = warn trcore/pre_tok -I- JET specific defaults set %splitn_module: update block detected, t= 8.10000000000000 %splitn_module: update block detected, t= 8.20000000000000 %splitn_module: update block detected, t= 8.30000000000000 %splitn_module: update block detected, t= 8.40000000000000 %splitn_module: update block detected, t= 8.50000000000000 %splitn_module: update block detected, t= 8.60000000000000 %splitn_module: update block detected, t= 8.70000000000000 namelist element value field(s): decimal point(s) inserted: AIMP XZIMP XZIMPS USER_CHI0 USER_CHI1 DTMINT DTMING USER_CHI0[2] USER_CHI1[2] USER_CHI0[3] USER_CHI1[3] USER_CHI0[4] USER_CHI1[4] USER_CHI0[5] USER_CHI1[5] USER_CHI0[6] USER_CHI1[6] USER_CHI0[7] USER_CHI1[7] XZRCYC "[ ]" indicates warning pertaining to indicated update block. %NLIST: open namelist file99802Y33TR.ZDA %trcom_static_box: loading static data -----------> entering UF0GET. NAMED FILE: ./99802Y33_tmp/OMF99802.NB2 %UF0DRD: DIMENSIONALITY OF INPUT FILE = 2 % NO. OF BEAMS (NB2 DATA) = 13 NAMED FILE: ./99802Y33_tmp/OMF99802.SIM1 %UF0DRD: DIMENSIONALITY OF INPUT FILE = 2 %UF0GET: ATOMIC WEIGHT NOT FOUND IN SIM01 USING A = 9.012 %UF0GET: ATOMIC NUMBER NOT FOUND IN SIM01 USING Z = 4.000 NAMED FILE: ./99802Y33_tmp/OMF99802.SIM2 %UF0DRD: DIMENSIONALITY OF INPUT FILE = 2 %UF0GET: ATOMIC WEIGHT NOT FOUND IN SIM02 USING A = 58.693 %UF0GET: ATOMIC NUMBER NOT FOUND IN SIM02 USING Z = 28.000 NAMED FILE: ./99802Y33_tmp/OMF99802.MMX %UF0DRD: DIMENSIONALITY OF INPUT FILE = 3 UF0GET: -> Btor is clockwise from BTOR_CCW scalar in MMX data. UF0GET: -> Itor is clockwise from ITOR_CCW scalar in MMX data. UF0GET: MMX max exponent: 2 %UF0GET -- finished. %DATCHK: full equilibrium input DATCHK: CHECKING ARRAY DIMENSIONS, SWITCHES, ETC %DATCHK: NYXINV incremented to be odd: 101 161 %DATCHK: no ECH/ECCD, NLECH=F, %DATCHK: no Lower Hybrid, NLLH=F %DATCKA: ACfile times pre-screen... %DATCKA -- CHECKING NON-DEFAULT SPECIFICATIONS FOR AC FILE I/O GIVEN IN NAMELIST CHARACTER DATA ARRAYS "SELOUT" AND "SELAVG" %ASCXFIN -- AC FILE OPERATION COMPLETED SUCCESSFULLY. dummy trdatusub vsn trgdat_check called (OK). dummy trdatusub vsn trgdat_psload called (OK). *UTRCHK: CHECKING TRDAT NAMELIST SPECIFICATIONS. %UTRCHK: full equilibrium input *** OFFSET (TIME0) OF 4.0000E+01 SECONDS APPLIED TO ALL INPUT DATA *** *DDEFIN: SET UP PHYSICS DATA FOR ANALYSIS: TIME RANGE IS TINIT= 7.0000E+00, FTIME= 8.8000E+00 SECONDS. SETSCD - SET SCALAR DATA FOR UPF SETTIM - SET UP TIMING INFORMATION FOR UPF *UF1GET: PROCESSING "CUR": plasma current amps ------------------- NAMED FILE: ./99802Y33_tmp/OMF99802.CUR *UF1GET: PROCESSING "RBZ": [ext. B field] * R Tesla*cm ----------- NAMED FILE: ./99802Y33_tmp/OMF99802.RBZ %FIXUNS: CONVERTING UFILE RBZ DATA UNITS, M.T , TO Tesla*cm >CONVERSION FACTOR: * 100.000 *UF1GET: PROCESSING "DFL": diamagnetic flux Webers --------------- NAMED FILE: ./99802Y33_tmp/MAGN99802.FLX *UF1GET: PROCESSING "GAS": gas flow source #/sec ----------------- NAMED FILE: ./99802Y33_tmp/GASM99802.ELER ?FIXUNS: UFILE GAS DATA UNITS LABEL "e/s " NOT RECOGNIZED ?UF1GET: UFILE UNITS ERROR ./99802Y33_tmp/GASM99802.ELER (GAS) ***** FATAL ERROR ***** UF1GET -- ERROR(S) ACQUIRING 1D INPUT DATA ?SETD1D: ERROR PROCESSING => ./99802Y33_tmp/GASM99802.ELER (GAS) *UF1GET: PROCESSING "NTX": Neutron flux n/sec -------------------- NAMED FILE: ./99802Y33_tmp/TIN99802.RNT *UF1GET: PROCESSING "PF0": Psi(axis) Wb/rad ---------------------- NAMED FILE: ./99802Y33_tmp/OMF99802.PF0 *UF1GET: PROCESSING "PLF": Poloidal flux Wb/rad ------------------ NAMED FILE: ./99802Y33_tmp/OMF99802.PLF *UF1GET: PROCESSING "RCY": recycling source #/sec ---------------- NAMED FILE: ./99802Y33_tmp/EDG799802.FLW *UF1GET: PROCESSING "TRF": Toroidal flux Webers ------------------ NAMED FILE: ./99802Y33_tmp/OMF99802.TRF *UF1GET: PROCESSING "VSF": surface voltage volts ----------------- NAMED FILE: ./99802Y33_tmp/EFP99802.VPA *UF1GET: PROCESSING "ZEF": Zeff ------------------------------- NAMED FILE: ./99802Y33_tmp/KS399802.ZEFH *UF3GET: PROCESSING "MMX": Equilibrium moments cm ---------------- NAMED FILE: ./99802Y33_tmp/OMF99802.MMX %FIXUNS: CONVERTING UFILE DATA UNITS, M , TO cm >CONVERSION FACTOR: * 100.000 ---> Geteq: #moments NMOM = 16 Geteq: Interpolate equilibrium data for UPF SETLIM - SET UP Axisymmetric limiter data for UPF *UF1GET: PROCESSING "LIM": Axisymmetric Limiter cm --------------- NAMED FILE: ./99802Y33_tmp/OMF99802.LIM %UF1GET: X axis is not the timebase, processing axis units cm %FIXUNS: CONVERTING UFILE LIM TIMEBASE UNITS, M , TO cm >CONVERSION FACTOR: * 100.000 %FIXUNS: CONVERTING UFILE LIM DATA UNITS, M , TO cm >CONVERSION FACTOR: * 100.000 *UF2GET: PROCESSING "BOL": Power radiated W/cm**3 ---------------- NAMED FILE: ./99802Y33_tmp/BOLT99802.AVFL %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "nrad "; 2ND DIMENSION = "SEC " %FIXUNS: CONVERTING UFILE BOL DATA UNITS, W/M**3 , TO W/cm**3 >CONVERSION FACTOR: *0.100000E-05 %CHKTIM: DATA TIME RANGE 8.0000E+00 TO 8.5000E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETRD0: X VECTOR SET FROM UFILE NORMALIZED MINOR RADIUS DATA *UF2GET: PROCESSING "GRB": MHD g (R*Bt) profile Tesla*cm --------- NAMED FILE: ./99802Y33_tmp/OMF99802.GRB %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "Seconds " %FIXUNS: CONVERTING UFILE GRB DATA UNITS, TESLA*M , TO Tesla*cm >CONVERSION FACTOR: * 100.000 %SETDAT2-- X axis is normalized flux, not modified, npts= 41 *UF2GET: PROCESSING "NER": electron density n/cm**3 -------------- NAMED FILE: ./99802Y33_tmp/PRFL99802.NE %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "SQRTPSI "; 2ND DIMENSION = "SEC " %FIXUNS: CONVERTING UFILE NER DATA UNITS, M**-3 , TO n/cm**3 >CONVERSION FACTOR: *0.100000E-05 %FIXUNS: Rescaling Ufile NER DATA by 0.950000 ( SC_NER ) %SETDAT2-- X axis is normalized flux, not modified, npts=131 *UF2GET: PROCESSING "OMG": plasma rotation rad/sec --------------- NAMED FILE: ./99802Y33_tmp/PRFL99802.AF %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "PSIN "; 2ND DIMENSION = "SEC " %CHKTIM: DATA TIME RANGE 7.3500E+00 TO 8.0500E+00 SECONDS DOES NOT COVER THE ENTIRE ANALYSIS TIME RANGE (TINIT,FTIME). %SETDAT2-- X axis is normalized flux, not modified, npts=131 *UF2GET: PROCESSING "PRS": MHD Pressure profile Pascals ---------- NAMED FILE: ./99802Y33_tmp/OMF99802.PRS %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "Seconds " %SETDAT2-- X axis is normalized flux, not modified, npts= 41 *UF2GET: PROCESSING "QPR": q profile --------------------------- NAMED FILE: ./99802Y33_tmp/OMF99802.QPR %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "Seconds " %SETDAT2-- X axis is normalized flux, not modified, npts= 41 *UF2GET: PROCESSING "TER": electron temperature eV --------------- NAMED FILE: ./99802Y33_tmp/PRFL99802.TE %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "SQRTPSI "; 2ND DIMENSION = "SEC " %SETDAT2-- X axis is normalized flux, not modified, npts=131 *UF2GET: PROCESSING "TI2": ion temperature eV -------------------- NAMED FILE: ./99802Y33_tmp/TION99802.TI %UF2GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = " "; 2ND DIMENSION = "SEC " %SETDAT2-- X axis is normalized flux, not modified, npts= 21 *UF3GET: PROCESSING "SIM01": impurity species n/cm**3 ------------ NAMED FILE: ./99802Y33_tmp/OMF99802.SIM1 _%UF3GET FALLBACK: 2D UFILE INPUT => Y-AXIS INVARIANT PROFILE %UF3GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "SQRTPSI "; 2ND DIMENSION = "SEC " 3RD DIMENSION = " " %FIXUNS: CONVERTING UFILE DATA UNITS, M**-3 , TO n/cm**3 >CONVERSION FACTOR: *0.100000E-05 %SETDAT2-- X axis is normalized flux, not modified, npts=131 *UF3GET: PROCESSING "SIM02": impurity species n/cm**3 ------------ NAMED FILE: ./99802Y33_tmp/OMF99802.SIM2 _%UF3GET FALLBACK: 2D UFILE INPUT => Y-AXIS INVARIANT PROFILE %UF3GET -- INPUT UFILE AXES OUT OF ORDER, WILL SWAP: 1ST DIMENSION = "SQRTPSI "; 2ND DIMENSION = "SEC " 3RD DIMENSION = " " %FIXUNS: CONVERTING UFILE DATA UNITS, M**-3 , TO n/cm**3 >CONVERSION FACTOR: *0.100000E-05 %SETDAT2-- X axis is normalized flux, not modified, npts=131 *DDEFIN: Set Plasma Heating parameters :- ========================== -> entering setnbi (neutral beam powers, voltages, etc.) SETNBI - SET UP NEUTRAL BEAM DATA FOR UPF *UF2GET: PROCESSING "NB2": beam heating data ------------------- NAMED FILE: ./99802Y33_tmp/OMF99802.NB2 %SETNBI- BEAM FULL ENERGY FRACTIONS SET BY NBI FILE ** %SETNBI- BEAM HALF ENERGY FRACTIONS SET BY NBI FILE ** %setnbi: NBI on/off times taken from data. %NB_ONOFF: NBI on/off times (s): 7.0064E+00 8.1084E+00 Zeff vs. time only: Zeff vs. time input data provided. %SETDFLT: "DTG" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DTMAXG = 2.0000E-02 %setmisc -- time dependent geometry timestep enabled (ZOOM is off). %SETDFLT: "DTS" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DT_SOURCES = 5.0000E-03 %setmisc -- time dependent source timestep enabled (ZOOM is off). %SETDFLT: "DTX" INPUT DATA FILE NOT SPECIFIED ==>DEFAULT VALUE SUBSTITUTED, DT_OUTPUT = 2.0000E-02 %setmisc -- time dependent output timestep enabled (ZOOM is off). -------------------------------------------------- %trdat_bdy_check -- checking plasma boundary data trdat_bdy_check: OK ...min(r_curvature/(Rmax-Rmin)) is: 0.113198769800618 ...at time t= 8.17999999999997 seconds. ------------> thermal ion ptcl balance summary: Hydrogen NDEFINE=0 NMODEL=4 RC=NLRCYC GF=NLRCYC Deuterium NDEFINE=0 NMODEL=4 RC=NLRCYC GF=NLRCYC Tritium NDEFINE=0 NMODEL=4 RC=NLRCYC GF=NLRCYC Helium-3 (absent) Helium-4 (absent) Lithium-6 (absent) Recycling fractions RFRAC are specified. ------------------------------------ Fast ion summary: Beam species: T, D Fusion product species: He4 Minority RF species: (None) ------------------------------------ In TRDAT: calling COPY_PTNML COPY_PTNML_SUB: namelist: pt_template= "./99802Y33_tmp/99802Y33_input_pt.nml" COPY_PTNML_SUB: PT_SOLVER namelist file= ./99802Y33_tmp/99802Y33_input_pt.nml COPY_PTNML_SUB: zcmd= cp ./99802Y33_tmp/99802Y33_input_pt.nml ./99802Y33_pt.nml COPY_PTNML_SUB: file copy status (0 is normal): 0 ==========(runtrx TRDAT sts = 0)====== ==========LABEL execution=============== date: Tue Jun 25 14:13:33 EDT 2024 ( mccune001.pppl.gov ) ==>runtrx: label execution successful ==>runtrx: LINK_ON_HOST environment variable detected. ==========(runtrx)====================== ==========>runtrx normal exit<========== date: Tue Jun 25 14:13:34 EDT 2024 ( mccune001.pppl.gov )